The MspJI family of modification-dependent restriction endonucleases for epigenetic studies
نویسندگان
چکیده
منابع مشابه
A unique family of Mrr-like modification-dependent restriction endonucleases
Mrr superfamily of homologous genes in microbial genomes restricts modified DNA in vivo. However, their biochemical properties in vitro have remained obscure. Here, we report the experimental characterization of MspJI, a remote homolog of Escherichia coli's Mrr and show it is a DNA modification-dependent restriction endonuclease. Our results suggest MspJI recognizes (m)CNNR (R = G/A) sites and ...
متن کاملChemical Display of Pyrimidine Bases Flipped Out by Modification-Dependent Restriction Endonucleases of MspJI and PvuRts1I Families
The epigenetic DNA modifications 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) in eukaryotes are recognized either in the context of double-stranded DNA (e.g., by the methyl-CpG binding domain of MeCP2), or in the flipped-out state (e.g., by the SRA domain of UHRF1). The SRA-like domains and the base-flipping mechanism for 5(h)mC recognition are also shared by the recently discovere...
متن کاملModification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix
MspJI belongs to a family of restriction enzymes that cleave DNA containing 5-methylcytosine (5mC) or 5-hydroxymethylcytosine (5hmC). MspJI is specific for the sequence 5(h)mC-N-N-G or A and cleaves with some variability 9/13 nucleotides downstream. Earlier, we reported the crystal structure of MspJI without DNA and proposed how it might recognize this sequence and catalyze cleavage. Here we re...
متن کاملStructure and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease
The MspJI modification-dependent restriction endonuclease recognizes 5-methylcytosine or 5-hydroxymethylcytosine in the context of CNN(G/A) and cleaves both strands at fixed distances (N(12)/N(16)) away from the modified cytosine at the 3'-side. We determined the crystal structure of MspJI of Mycobacterium sp. JLS at 2.05-Å resolution. Each protein monomer harbors two domains: an N-terminal DNA...
متن کاملRestriction endonucleases and modification methylases in bacteria.
There are three mechanisms by which foreign DNA may enter a prokaryotic organism: conjugation between Gram-negative bacteria, uptake of exogenous DNA (transformation) and infection by viral (bacteriophage) nucleic acid. The interaction between a bacteriophage and its host bacterial cell has been extensively investigated. A bacterium can restrict phage infection through its ability to degrade th...
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ژورنال
عنوان ژورنال: Proceedings of the National Academy of Sciences
سال: 2011
ISSN: 0027-8424,1091-6490
DOI: 10.1073/pnas.1018448108